General features

Gene IDMPN515
TypeCDS
From632282
To628410
Strand-
General namerpoC
DefinitionDNA-directed RNA polymerase beta' chain
nt length3873
aa length1290
m.w.144894.24
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE800 rpoC DNA-directed RNA polymerase subunit beta' 92365:9623115389.6e-03
mgengi|12045199 DNA-directed RNA polymerase, subunit beta' (rpoC) [Mycoplasma genitalium]23644.4e-01
mpulgi|15829016 DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT) [Mycoplasma pulmonis]8683.6e-02
mmobgi|47459117 DNA-directed RNA polymerase beta' chain [Mycoplasma mobile 163K]7867.2e-04
mmycgi|42561523 DNA-directed RNA polymerase beta' chain [Mycoplasma mycoides subsp. mycoides SC]11691.4e-02
mgalgi|31544418 RpoC [Mycoplasma gallisepticum R]15892.4e-01
uuregi|13357746 DNA-directed RNA polymerase beta' chain [Ureaplasma urealyticum]14318.5e-02
phytgi|39938747 DNA-directed RNA polymerase beta' subunit [Onion yellows phytoplasma]9667.4e-02
bsubgi|16077176 RNA polymerase (beta' subunit) [Bacillus subtilis]10683.4e-01
cacegi|15896391 DNA-dependent RNA polymerase beta' subunit [Clostridium acetobutylicum]10072.4e-01
ecoligi|16131818 DNA-directed RNA polymerase beta' subunit [Escherichia coli K12]7652.4e+00

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb1_11RNA polymerase Rpb1, domain 112-403562.84e-166

RNA_pol_Rpb1_21RNA polymerase Rpb1, domain 2405-556273.16.4e-79

RNA_pol_Rpb1_51RNA polymerase Rpb1, domain 5861-1231168.91.5e-47

RNA_pol_Rpb1_31RNA polymerase Rpb1, domain 3559-739157.34.5e-44

RNA_pol_Rpb1_41RNA polymerase Rpb1, domain 4768-85987.93.7e-23

Apocytochr_F_C1Apocytochrome F, C-terminal1068-1138-61.10.022

Bse634I1Cfr10I/Bse634I restriction endonuclea444-721-117.90.4

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|13508254DNA-directed RNA polymerase beta' chain [Mycoplasma pneumoniae M129] 68630.0e+00
gi|1350852DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase su... 63680.0e+00
gi|108885105DNA-directed RNA polymerase, beta' subunit [synthetic Mycoplasma genitalium JCVI... 63610.0e+00
gi|31544418RpoC [Mycoplasma gallisepticum R] 42410.0e+00
gi|26553532DNA-directed RNA polymerase subunit beta' [Mycoplasma penetrans HF-2] 41120.0e+00
gi|188518527DNA-directed RNA polymerase, beta' subunit [Ureaplasma urealyticum serovar 12 st... 37960.0e+00
gi|171920800DNA-directed RNA polymerase, beta' subunit [Ureaplasma urealyticum serovar 9 str... 37950.0e+00
gi|171920104DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 1 str. ATC... 37790.0e+00
gi|13357746DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 3 str. ATC... 37790.0e+00
gi|183508778DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 6 str. ATC... 37780.0e+00


Maintained by Jun Ishikawa