General features

Gene IDMPN516
TypeCDS
From636461
To632286
Strand-
General namerpoB
DefinitionDNA-directed RNA polymerase beta chain
nt length4176
aa length1391
m.w.155620.19
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mypeMYPE790 rpoB DNA-directed RNA polymerase subunit beta 88217:9234414229.6e-03
mgengi|12045200 DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma genitalium]23894.4e-01
mpulgi|15829017 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT) [Mycoplasma pulmonis]6723.6e-02
mmobgi|47459116 DNA-directed RNA polymerase beta chain [Mycoplasma mobile 163K]6367.2e-04
mmycgi|42561522 DNA-directed RNA polymerase beta chain [Mycoplasma mycoides subsp. mycoides SC]7751.4e-02
mgalgi|31544417 RpoB [Mycoplasma gallisepticum R]16042.4e-01
uuregi|13357745 DNA-directed RNA polymerase beta subunit [Ureaplasma urealyticum]13558.5e-02
phytgi|39938746 DNA-directed RNA polymerase beta subunit [Onion yellows phytoplasma]6577.4e-02
bsubgi|16077175 RNA polymerase (beta subunit) [Bacillus subtilis]8513.4e-01
cacegi|15896392 DNA-dependent RNA polymerase beta subunit [Clostridium acetobutylicum]6762.4e-01
ecoligi|16131817 DNA-directed RNA polymerase beta subunit [Escherichia coli K12]5433.9e-155

*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6815-1280739.03.7e-219

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71282-1358175.31.8e-49

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3611-680142.11.8e-39

RNA_pol_Rpb2_11RNA polymerase beta subunit32-60770.37.1e-18

RNA_pol_Rpb2_451RNA polymerase beta subunit external689-75652.61.6e-12

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|13508255RNA polymerase beta subunit [Mycoplasma pneumoniae M129] 73880.0e+00
gi|12045200DNA-directed RNA polymerase, beta subunit [synthetic Mycoplasma genitalium JCVI-... 63750.0e+00
gi|33860205DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subu... 42300.0e+00
gi|31544417RpoB [Mycoplasma gallisepticum R] 42280.0e+00
gi|600226RNA polymerase beta subunit [Mycoplasma gallisepticum] 42000.0e+00
gi|66880050COG0085: DNA-directed RNA polymerase, beta subunit/140 kD subunit [Mycoplasma ge... 40320.0e+00
gi|26553531DNA-directed RNA polymerase subunit beta [Mycoplasma penetrans HF-2] 37480.0e+00
gi|171920404DNA-directed RNA polymerase, beta subunit [Ureaplasma parvum serovar 1 str. ATCC... 36000.0e+00
gi|170761945DNA-directed RNA polymerase, beta subunit [Ureaplasma parvum serovar 6 str. ATCC... 35970.0e+00
gi|188524077DNA-directed RNA polymerase, beta subunit [Ureaplasma urealyticum serovar 12 str... 35940.0e+00


Maintained by Jun Ishikawa