General features

Gene IDMYPE1600
TypeCDS
From204575
To205024
Strand+
General namenusB
Definitiontranscription termination factor N-utilization substance protein B
nt length450
aa length149
m.w.17693.60
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN030 Hypothetical protein 34469:34975416.5e-06
mgengi|12044877 conserved hypothetical protein [Mycoplasma genitalium]375.5e-05
mmycgi|42560661 transcription termination factor nusB [Mycoplasma mycoides subsp. mycoides SC]416.5e-06
mgalgi|31544713 conserved hypothetical [Mycoplasma gallisepticum R]461.9e-07
uuregi|13357860 transcription termination factor [Ureaplasma urealyticum]901.2e-20
phytgi|39938929 transcription termination factor [Onion yellows phytoplasma]438.3e-07
bsubgi|16079488 similar to transcription termination [Bacillus subtilis]372.9e-04
cacegi|15895354 Transcription termination factor NusB [Clostridium acetobutylicum]559.7e-10
ecoligi|16128401 transcription antitermination protein NusB [Escherichia coli K12]381.5e-04

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

NusB1NusB family24-1493.90.00099

DUF19481Domain of unknown function (DUF1948)21-147-3.30.0031

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553613transcription termination factor N-utilization substance protein B [Mycoplasma p... 6194.1e-63
gi|13357860transcription antitermination factor NusB [Ureaplasma parvum serovar 6 str. ATCC... 1939.6e-14
gi|171920577transcription antitermination factor NusB [Ureaplasma urealyticum serovar 9 str.... 1875.4e-13
gi|187917985N utilization substance protein B [Borrelia hermsii DAH] 1373.6e-07
gi|119952909N utilization substance protein B [Borrelia turicatae 91E135] 1347.0e-07
gi|67921757Antitermination protein NusB [Crocosphaera watsonii WH 8501] 1302.3e-06
gi|160915119hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991] 1275.1e-06
gi|195950733hypothetical protein Bbur2_00270 [Borrelia burgdorferi 29805] 1266.6e-06
gi|196190747transcription antitermination factor NusB, putative [Synechococcus sp. PCC 7335] 1241.1e-05
gi|15594453N-utilization substance protein B (nusB) [Borrelia burgdorferi B31] 1241.1e-05


Maintained by Jun Ishikawa