General features

Gene IDMYPE1990
TypeCDS
From252208
To253086
Strand+
General namepolI
DefinitionDNA polymerase I: 5'-3' exonuclease
nt length879
aa length292
m.w.33312.87
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN379 polA Probable 5'-3' exonuclease 456272:4571472192.6e-59
mgengi|12045117 5'-3' exonuclease, putative [Mycoplasma genitalium]2215.2e-60
mpulgi|15829191 DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]1426.4e-36
mmobgi|47459323 DNA polymerase I [Mycoplasma mobile 163K]1587.1e-41
mmycgi|42561209 DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC]1811.8e-47
mgalgi|31544437 Exo [Mycoplasma gallisepticum R]2371.5e-64
uuregi|13357976 DNA polymerase I: 5'-3' exonuclease domain [Ureaplasma urealyticum]2201.9e-59
phytgi|39939162 5'-3' exonuclease [Onion yellows phytoplasma]1523.2e-39
bsubgi|16079961 DNA polymerase I [Bacillus subtilis]1791.7e-46
cacegi|15894383 DNA polymerase I, polA [Clostridium acetobutylicum]1661.1e-42
ecoligi|16131704 DNA polymerase I [Escherichia coli K12]1331.2e-32

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

5_3_exonuc_N15'-3' exonuclease, N-terminal resolvase-3-174185.81.2e-52

5_3_exonuc15'-3' exonuclease, C-terminal SAM fold176-276115.22.2e-31

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553652DNA polymerase I: 5'-3' exonuclease [Mycoplasma penetrans HF-2] 13719.8e-150
gi|31544437Exo [Mycoplasma gallisepticum R] 5473.5e-54
gi|135081185'-3' exonuclease [Mycoplasma pneumoniae M129] 5359.3e-53
gi|120451175'-3' exonuclease, putative [synthetic Mycoplasma genitalium JCVI-1.0] 5294.4e-52
gi|188569177Exo [Ureaplasma urealyticum serovar 2] 5285.7e-52
gi|188524383DNA polymerase type-A family protein [Ureaplasma urealyticum serovar 12 str. ATC... 5268.7e-52
gi|171920902DNA polymerase type-A family protein [Ureaplasma urealyticum serovar 9 str. ATCC... 5261.1e-51
gi|13357976Exo [Ureaplasma parvum serovar 6 str. ATCC 27818] 5124.1e-50
gi|56964474DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] 4532.8e-43
gi|89894086hypothetical protein [Desulfitobacterium hafniense Y51] 4523.9e-43


Maintained by Jun Ishikawa