General features

Gene IDMYPE2490
TypeCDS
From308379
To308014
Strand-
General namehupA
DefinitionDNA-binding histone-like protein HU-alpha
nt length366
aa length121
m.w.14039.18
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN529 Hypothetical protein 651246:650917375.1e-05
mgengi|12045213 conserved hypothetical protein [Mycoplasma genitalium]368.6e-05
mmobgi|47459316 bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]439.2e-07
mmycgi|42560949 DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides SC]376.6e-05
mgalgi|31544347 HimA/Hu [Mycoplasma gallisepticum R]583.3e-11
uuregi|13357842 DNA-binding protein Hu-alpha (HU-2) [Ureaplasma urealyticum]482.8e-08
bsubgi|16079336 non-specific DNA-binding protein HBsu [Bacillus subtilis]304.1e-02
ecoligi|16129668 integration host factor alpha subunit [Escherichia coli K12]372.2e-04

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

Bac_DNA_binding1Bacterial DNA-binding protein19-10810.61.1e-05

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553701DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans HF-2] 4813.6e-47
gi|31544347HimA/Hu [Mycoplasma gallisepticum R] 1212.2e-05
gi|85859597DNA-binding protein HU [Syntrophus aciditrophicus SB] 1032.5e-03
gi|189426728histone family protein DNA-binding protein [Geobacter lovleyi SZ] 1014.9e-03
gi|56460501Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina loihiensis... 952.4e-02
gi|13357842DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC 27818] 933.6e-02
gi|186476310integration host factor, alpha subunit [Burkholderia phymatum STM815] 916.2e-02
gi|91784422Integration host factor, alpha subunit [Burkholderia xenovorans LB400] 909.0e-02
gi|119494127Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] 909.2e-02
gi|187924726integration host factor, alpha subunit [Burkholderia phytofirmans PsJN] 909.2e-02


Maintained by Jun Ishikawa