General features

Gene IDMYPE3310
TypeCDS
From433163
To435346
Strand+
General name
Definition3'-5' exoribonuclease RNase R
nt length2184
aa length727
m.w.84090.74
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN243 vacB Ribonuclease R 294381:2965614103.0e-116
mgengi|12044956 virulence-associated protein homolog (vacB) [Mycoplasma genitalium]4041.2e-114
mpulgi|15828822 VACB-LIKE (Shigella flexneri) RIBONUCLEASE II [Mycoplasma pulmonis]3366.7e-94
mmobgi|47459100 vacb-like ribonuclease II [Mycoplasma mobile 163K]3581.7e-100
mmycgi|42561375 Ribonulease R [Mycoplasma mycoides subsp. mycoides SC]3575.2e-100
mgalgi|31544662 VacB [Mycoplasma gallisepticum R]4773.2e-136
uuregi|13357613 virulence associated protein - Exoribonucleases [Ureaplasma urealyticum]5686.3e-164
bsubgi|16080414 similar to hypothetical proteins [Bacillus subtilis]4355.1e-123
cacegi|15894003 FUSION ribonuclease and ribosomal protein S1 domain [Clostridium acetobutylicum]3554.8e-99
ecoligi|49176467 RNase R [Escherichia coli K12]2755.8e-75

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNB1RNB domain261-592500.12.9e-147

S11S1 RNA binding domain639-72338.72.3e-08

OB_RNB1Ribonuclease B OB domain83-1427.90.0041

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|265537863'-5' exoribonuclease RNase R [Mycoplasma penetrans HF-2] 35330.0e+00
gi|195867392ribonuclease R [Ureaplasma urealyticum serovar 9 str. ATCC 33175] 14029.1e-153
gi|188524165ribonuclease R [Ureaplasma urealyticum serovar 12 str. ATCC 33696] 14021.0e-152
gi|171920549ribonuclease R [Ureaplasma urealyticum serovar 11 str. ATCC 33695] 14001.5e-152
gi|188592591ribonuclease R [Ureaplasma urealyticum serovar 10] 14001.6e-152
gi|188568777ribonuclease R [Ureaplasma urealyticum serovar 2] 13973.1e-152
gi|13357613ribonuclease R [Ureaplasma parvum serovar 6 str. ATCC 27818] 13651.8e-148
gi|171920424ribonuclease R [Ureaplasma parvum serovar 1 str. ATCC 27813] 13642.5e-148
gi|31544662VacB [Mycoplasma gallisepticum R] 11179.8e-120
gi|15616115ribonuclease R [Bacillus halodurans C-125] 11034.3e-118


Maintained by Jun Ishikawa