General features

Gene IDMYPE3530
TypeCDS
From455952
To456392
Strand+
General namesmpB
DefinitiontmRNA-binding small protein B
nt length441
aa length146
m.w.17317.31
COG[O] Posttranslational modification, protein turnover, chaperones


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN074 SsrA-binding protein 88341:878981153.4e-28
mgengi|12044911 small protein (smpB) [Mycoplasma genitalium]1151.5e-28
mpulgi|15828823 SMALL PROTEIN B [Mycoplasma pulmonis]1201.3e-29
mmobgi|47459099 ssra-binding protein [Mycoplasma mobile 163K]1222.1e-30
mmycgi|42561376 SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC]1452.4e-37
mgalgi|31544647 SmpB [Mycoplasma gallisepticum R]1452.9e-37
uuregi|13357614 small protein B [Ureaplasma urealyticum]1505.5e-39
phytgi|39938632 tmRNA-binding protein [Onion yellows phytoplasma]1251.6e-31
bsubgi|16080413 similar to hypothetical proteins [Bacillus subtilis]1272.7e-31
cacegi|15894004 TmRNA-binding protein SmpB [Clostridium acetobutylicum]1264.4e-31
ecoligi|16130539 SsrA-binding protein [Escherichia coli K12]1142.6e-27

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

SmpB1SmpB protein2-69100.27.1e-27

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553806tmRNA-binding small protein B [Mycoplasma penetrans HF-2] 6061.2e-61
gi|13357614SsrA-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818] 3254.5e-29
gi|146296128SsrA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] 3245.9e-29
gi|15644629SsrA-binding protein [Thermotoga maritima MSB8] 3237.6e-29
gi|148269806SsrA-binding protein [Thermotoga sp. RQ2] 3182.9e-28
gi|117926750SsrA-binding protein [Magnetococcus sp. MC-1] 3157.9e-28
gi|113475974SsrA-binding protein [Trichodesmium erythraeum IMS101] 3103.0e-27
gi|116491420tmRNA-binding protein, SsrA-binding protein [Oenococcus oeni ATCC BAA-1163] 3094.0e-27
gi|89897581SsrA-binding protein [Desulfitobacterium hafniense DCB-2] 3067.5e-27
gi|78043075SsrA-binding protein [Carboxydothermus hydrogenoformans Z-2901] 3059.2e-27


Maintained by Jun Ishikawa