General features

Gene IDMYPE3790
General nameclpB
DefinitionATP-dependent protease binding subunit
nt length2118
aa length705
COG[O] Posttranslational modification, protein turnover, chaperones

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN531 clpB Chaperone clpB 653949:6518027871.6e-01
mgengi|12045215 ATP-dependent Clp protease, ATPase subunit (clpB) [Mycoplasma genitalium]7941.6e-01
mmobgi|47459200 ATP-dependent Clp protease, ATPase subunit [Mycoplasma mobile 163K]7331.0e-03
mmycgi|42561142 ATP dependant protease ClpB [Mycoplasma mycoides subsp. mycoides SC]7282.8e-04
mgalgi|31544696 Clp [Mycoplasma gallisepticum R]8102.2e-03
uuregi|13357952 ATP-dependent serine proteinase - heat shock protein [Ureaplasma urealyticum]7498.5e-03
bsubgi|16077154 class III stress response-related ATPase [Bacillus subtilis]5801.2e-166
cacegi|15894246 ATPase with chaperone activity, two ATP-binding domains [Clostridium acetobutylicum]6767.3e-03
ecoligi|16130513 ATP-dependent protease, Hsp 100, part of multi-chaperone system with DnaK, DnaJ, and GrpE [Escherichia coli K12]6502.2e-01

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result

ModelNo.DescriptionPosition (aa)ScoreE-value

AAA_21ATPase family associated with various450-606339.94.8e-99

ClpB_D2-small1C-terminal, D2-small domain, of ClpB612-70198.03.2e-26

AAA2ATPase family associated with various54-250, 454-66465.81.6e-16

AAA_51ATPase family associated with various454-59829.63.3e-06

AAA_31ATPase family associated with various454-589-14.90.016


Sigma54_activat1Sigma-54 interaction domain424-604-186.30.083

Arch_ATPase1Archaeal ATPase33-218-70.20.095

Antimicrobial191Pseudin antimicrobial peptide417-43814.00.17

ResIII1Type III restriction enzyme, res subu32-158-44.30.28

BLAST search result (top 10 hits)

gi|26553830ATP-dependent protease binding subunit [Mycoplasma penetrans HF-2] 31090.0e+00
gi|31544696Clp [Mycoplasma gallisepticum R] 18960.0e+00
gi|12045215ATP-dependent Clp protease, ATPase subunit [synthetic Mycoplasma genitalium JCVI... 18490.0e+00
gi|13508270ATP-dependent protease binding subunit ClpB [Mycoplasma pneumoniae M129] 18490.0e+00
gi|162447977ATP-dependent Clp protease ATP-binding subunit [Acholeplasma laidlawii PG-8A] 17490.0e+00
gi|171920854chaperone protein ClpB [Ureaplasma urealyticum serovar 9 str. ATCC 33175] 17260.0e+00
gi|110005394putative atpase with chaperone activity, clp protease subunit protein [Spiroplas... 17170.0e+00
gi|188039580chaperone ClpB [Ureaplasma urealyticum serovar 8] 17170.0e+00
gi|196240564ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425] 17010.0e+00
gi|186701692chaperone ClpB [Ureaplasma parvum serovar 6 str. ATCC 27818] 16980.0e+00

Maintained by Jun Ishikawa