General features

Gene IDMYPE7550
General namerpsD
Definitionribosomal protein S4
nt length609
aa length202
COG[J] Translation, ribosomal structure and biogenesis

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN446 rpsD 30S ribosomal protein S4 543281:5426642292.0e-62
mgengi|12045167 ribosomal protein S4 [Mycoplasma genitalium]2207.1e-60
mpulgi|15829187 30S RIBOSOMAL PROTEIN S4 [Mycoplasma pulmonis]1892.1e-50
mmobgi|47458904 30s ribosomal protein s4 [Mycoplasma mobile 163K]2131.1e-57
mmycgi|42560826 30S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC]2184.7e-59
mgalgi|31544739 RpsD [Mycoplasma gallisepticum R]2347.7e-64
uuregi|13358061 ribosomal protein S4 [Ureaplasma urealyticum]2501.1e-68
phytgi|39939072 ribosomal protein S4 and related protein [Onion yellows phytoplasma]1392.3e-35
bsubgi|16080018 ribosomal protein S4 (BS4) [Bacillus subtilis]1791.3e-46
cacegi|15896356 Ribosomal protein S4 [Clostridium acetobutylicum]1367.2e-34
ecoligi|16131175 30S ribosomal protein S4 [Escherichia coli K12]1312.8e-32

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result

ModelNo.DescriptionPosition (aa)ScoreE-value

S41S4 domain94-14176.87.9e-20

Ribosomal_S41Ribosomal protein S4/S9 N-terminal domai2-9375.42e-19

BLAST search result (top 10 hits)

gi|26554211ribosomal protein S4 [Mycoplasma penetrans HF-2] 10273.6e-110
gi|171920763ribosomal protein S4 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] 6223.8e-63
gi|188568931ribosomal protein S4 [Ureaplasma urealyticum serovar 2] 6214.4e-63
gi|13358061ribosomal protein S4 [Ureaplasma parvum serovar 6 str. ATCC 27818] 6197.8e-63
gi|31544739RpsD [Mycoplasma gallisepticum R] 5821.5e-58
gi|13508185ribosomal protein S4 [Mycoplasma pneumoniae M129] 5686.9e-57
gi|12045167ribosomal protein S4 [synthetic Mycoplasma genitalium JCVI-1.0] 5443.4e-54
gi|8331998830S ribosomal protein S4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] 5329.1e-53
gi|66879967COG0522: Ribosomal protein S4 and related proteins [Mycoplasma genitalium G-37] 5321.0e-52
gi|4256082630S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] 5311.3e-52

Maintained by Jun Ishikawa