General features

Gene IDMYPE790
TypeCDS
From88217
To92344
Strand+
General namerpoB
DefinitionDNA-directed RNA polymerase subunit beta
nt length4128
aa length1375
m.w.154731.28
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN516 rpoB DNA-directed RNA polymerase beta chain 636461:63228614222.4e-07
mgengi|12045200 DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma genitalium]14615.6e-01
mpulgi|15829017 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT) [Mycoplasma pulmonis]6772.8e-02
mmobgi|47459116 DNA-directed RNA polymerase beta chain [Mycoplasma mobile 163K]6784.6e-03
mmycgi|42561522 DNA-directed RNA polymerase beta chain [Mycoplasma mycoides subsp. mycoides SC]8117.5e-17
mgalgi|31544417 RpoB [Mycoplasma gallisepticum R]15572.4e-01
uuregi|13357745 DNA-directed RNA polymerase beta subunit [Ureaplasma urealyticum]14441.1e-01
phytgi|39938746 DNA-directed RNA polymerase beta subunit [Onion yellows phytoplasma]6635.6e-02
bsubgi|16077175 RNA polymerase (beta subunit) [Bacillus subtilis]7571.9e-80
cacegi|15896392 DNA-dependent RNA polymerase beta subunit [Clostridium acetobutylicum]7271.3e-30
ecoligi|16131817 DNA-directed RNA polymerase beta subunit [Escherichia coli K12]5258.3e-150

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6785-1259672.92.8e-199

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71261-1337166.01.1e-46

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3586-655137.54.1e-38

RNA_pol_Rpb2_11RNA polymerase beta subunit31-58267.16.5e-17

RNA_pol_Rpb2_451RNA polymerase beta subunit external664-72865.52e-16

RNA_pol_Rpb2_21RNA polymerase Rpb2, domain 2347-513-36.90.0082

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553531DNA-directed RNA polymerase subunit beta [Mycoplasma penetrans HF-2] 66890.0e+00
gi|31544417RpoB [Mycoplasma gallisepticum R] 38710.0e+00
gi|33860205DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subu... 38670.0e+00
gi|600226RNA polymerase beta subunit [Mycoplasma gallisepticum] 38560.0e+00
gi|12045200DNA-directed RNA polymerase, beta subunit [synthetic Mycoplasma genitalium JCVI-... 36300.0e+00
gi|13508255RNA polymerase beta subunit [Mycoplasma pneumoniae M129] 36070.0e+00
gi|188568698DNA-directed RNA polymerase, beta subunit [Ureaplasma urealyticum serovar 2] 35570.0e+00
gi|171920550DNA-directed RNA polymerase, beta subunit [Ureaplasma urealyticum serovar 9 str.... 35560.0e+00
gi|188524077DNA-directed RNA polymerase, beta subunit [Ureaplasma urealyticum serovar 12 str... 35540.0e+00
gi|171920404DNA-directed RNA polymerase, beta subunit [Ureaplasma parvum serovar 1 str. ATCC... 35540.0e+00


Maintained by Jun Ishikawa