General features

Gene IDMYPE800
TypeCDS
From92365
To96231
Strand+
General namerpoC
DefinitionDNA-directed RNA polymerase subunit beta'
nt length3867
aa length1288
m.w.145304.54
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN515 rpoC DNA-directed RNA polymerase beta' chain 632282:62841015383.5e-58
mgengi|12045199 DNA-directed RNA polymerase, subunit beta' (rpoC) [Mycoplasma genitalium]15451.3e-57
mpulgi|15829016 DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT) [Mycoplasma pulmonis]7918.7e-03
mmobgi|47459117 DNA-directed RNA polymerase beta' chain [Mycoplasma mobile 163K]8302.3e-01
mmycgi|42561523 DNA-directed RNA polymerase beta' chain [Mycoplasma mycoides subsp. mycoides SC]12254.7e-02
mgalgi|31544418 RpoC [Mycoplasma gallisepticum R]16495.8e-63
uuregi|13357746 DNA-directed RNA polymerase beta' chain [Ureaplasma urealyticum]15787.6e-02
phytgi|39938747 DNA-directed RNA polymerase beta' subunit [Onion yellows phytoplasma]10268.5e-02
bsubgi|16077176 RNA polymerase (beta' subunit) [Bacillus subtilis]11211.7e-24
cacegi|15896391 DNA-dependent RNA polymerase beta' subunit [Clostridium acetobutylicum]10796.7e-23
ecoligi|16131818 DNA-directed RNA polymerase beta' subunit [Escherichia coli K12]8131.3e-09

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb1_11RNA polymerase Rpb1, domain 15-395499.16e-147

RNA_pol_Rpb1_21RNA polymerase Rpb1, domain 2397-548268.12.1e-77

RNA_pol_Rpb1_51RNA polymerase Rpb1, domain 5855-1235155.31.9e-43

RNA_pol_Rpb1_31RNA polymerase Rpb1, domain 3551-733130.45.7e-36

RNA_pol_Rpb1_41RNA polymerase Rpb1, domain 4762-85385.02.7e-22

Apocytochr_F_C1Apocytochrome F, C-terminal1059-1180-65.10.056

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26553532DNA-directed RNA polymerase subunit beta' [Mycoplasma penetrans HF-2] 63610.0e+00
gi|31544418RpoC [Mycoplasma gallisepticum R] 41660.0e+00
gi|188518527DNA-directed RNA polymerase, beta' subunit [Ureaplasma urealyticum serovar 12 st... 39660.0e+00
gi|171920800DNA-directed RNA polymerase, beta' subunit [Ureaplasma urealyticum serovar 9 str... 39640.0e+00
gi|13508254DNA-directed RNA polymerase beta' chain [Mycoplasma pneumoniae M129] 39600.0e+00
gi|183508778DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 6 str. ATC... 39490.0e+00
gi|171920104DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 1 str. ATC... 39490.0e+00
gi|13357746DNA-directed RNA polymerase, beta' subunit [Ureaplasma parvum serovar 3 str. ATC... 39470.0e+00
gi|1350852DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase su... 39140.0e+00
gi|108885105DNA-directed RNA polymerase, beta' subunit [synthetic Mycoplasma genitalium JCVI... 39070.0e+00


Maintained by Jun Ishikawa