General features

Gene IDMYPE8220
TypeCDS
From1103527
To1101659
Strand-
General namehsdR
Definitiontype I restriction-modification system R subunit
nt length1869
aa length622
m.w.72501.34
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN345 hsdR Putative type I restriction enzyme MpnORFDP R protein 412681:413301352.2e-03
mpulgi|15828903 RESTRICTION MODIFICATION ENZYME SUBUNIT R2 [Mycoplasma pulmonis]738.9e-15
mmobgi|47459118 type I restriction enzyme r protein [Mycoplasma mobile 163K]622.2e-11
mgalgi|31544889 HsdR [Mycoplasma gallisepticum R]683.8e-13
cacegi|15896079 N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces [Clostridium acetobutylicum]881.2e-18
ecoligi|16132171 endonuclease R, host restriction [Escherichia coli K12]1394.2e-34

*mpne, Mycoplasma pneumoniae; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mgal, Mycoplasma gallisepticum; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

EcoEI_R_C1EcoEI R protein C-terminal395-621269.86.1e-78

ResIII1Type III restriction enzyme, res subu4-167199.68.2e-57

DEAD1DEAD/DEAH box helicase8-171-4.18.5e-05

Helicase_C1Helicase conserved C-terminal domain290-369-10.20.34

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554277type I restriction-modification system R subunit [Mycoplasma penetrans HF-2] 30340.0e+00
gi|78357542DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans G20] 15353.1e-168
gi|84616895type I restriction-modification system, R subunit [Desulfococcus multivorans] 15343.4e-168
gi|118578794EcoEI R, C-terminal domain protein [Pelobacter propionicus DSM 2379] 15291.4e-167
gi|77166475conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] 15272.3e-167
gi|88812207DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231] 14887.6e-163
gi|26991423type I restriction-modification system, R subunit [Pseudomonas putida KT2440] 14681.7e-160
gi|146281846type I restriction-modification system, R subunit [Pseudomonas stutzeri A1501] 14663.0e-160
gi|154174488type I restriction-modification system, R subunit [Campylobacter curvus 525.92] 14591.9e-159
gi|15804922type I restriction-modification system, R subunit [Escherichia coli O157:H7 str.... 14539.4e-159


Maintained by Jun Ishikawa