General features

Gene IDMYPE8360
TypeCDS
From1113399
To1112116
Strand-
General namesigA
DefinitionRNA polymerase sigma factor, contains similarity to Pfam domain Sigma-70
nt length1284
aa length427
m.w.49143.76
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN352 sigA RNA polymerase sigma factor rpoD 420240:4187413941.2e-111
mgengi|12045103 RNA polymerase sigma-43 factor (rpoD) [Mycoplasma genitalium]4015.7e-114
mpulgi|15828925 DNA-DIRECTED RNA POLYMERASE SIGMA FACTOR (SIGMA-A) [Mycoplasma pulmonis]2411.6e-65
mmobgi|47459124 DNA-directed RNA polymerase sigma factor [Mycoplasma mobile 163K]2594.7e-71
mmycgi|42561001 RNA polymerase sigma-A factor [Mycoplasma mycoides subsp. mycoides SC]2851.4e-78
mgalgi|31544593 RpoD [Mycoplasma gallisepticum R]4325.1e-123
uuregi|13357909 RNA polymerase sigma factor [Ureaplasma urealyticum]4025.7e-114
phytgi|39939114 DNA-directed RNA polymerase sigma subunit [Onion yellows phytoplasma]2541.2e-69
bsubgi|16079575 RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis]3013.7e-83
cacegi|15894582 RNA polymerase sigma factor RPOD [Clostridium acetobutylicum]2813.7e-77
ecoligi|16130963 RNA polymerase sigma factor [Escherichia coli K12]2532.2e-68

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2183-25397.35.3e-26

Sigma70_r41Sigma-70, region 4356-41165.12.6e-16

Sigma70_r31Sigma-70 region 3257-33816.30.00063

Sigma70_r1_21Sigma-70 factor, region 1.2140-1769.20.058

DnaD1DnaD-like domain143-210-13.90.41

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554290RNA polymerase sigma factor [Mycoplasma penetrans HF-2] 19650.0e+00
gi|31544593RpoD [Mycoplasma gallisepticum R] 9652.1e-102
gi|13357909RNA polymerase sigma factor [Ureaplasma parvum serovar 3 str. ATCC 27815] 9151.3e-96
gi|171920395RNA polymerase sigma factor [Ureaplasma parvum serovar 6 str. ATCC 27818] 9142.0e-96
gi|171920947RNA polymerase sigma factor [Ureaplasma urealyticum serovar 9 str. ATCC 33175] 9052.0e-95
gi|12045103RNA polymerase sigma factor RpoD [synthetic Mycoplasma genitalium JCVI-1.0] 8944.2e-94
gi|13508091Sigma-70 Factor Family [Mycoplasma pneumoniae M129] 8773.9e-92
gi|56421017DNA-directed RNA polymerase major sigma-43 factor (sigma-A) [Geobacillus kaustop... 7213.9e-74
gi|171323279RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp. WCH70] 7188.9e-74
gi|138896056RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp. G11MC16] 7142.8e-73


Maintained by Jun Ishikawa