General features

Gene IDMYPE9040
TypeCDS
From1215537
To1212412
Strand-
General name
Definitionhelicase with SNF2 domain
nt length3126
aa length1041
m.w.122909.19
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN020 yb95 Hypothetical helicase 23022:261143575.7e-100
mgengi|12044868 ATP-dependent RNA helicase, putative [Mycoplasma genitalium]3702.9e-104
mmobgi|47459148 swf/snf family helicase-like protein [Mycoplasma mobile 163K]4751.4e-135
mgalgi|31544906 HepA/SNF2 [Mycoplasma gallisepticum R]4036.7e-114
uuregi|13357819 unique hypothetical [Ureaplasma urealyticum]552.6e-09
bsubgi|16080681 similar to SNF2 helicase [Bacillus subtilis]2733.8e-74
cacegi|15896248 Superfamily II DNA/RNA helicase, SNF2 family [Clostridium acetobutylicum]4771.2e-135
ecoligi|16128053 ATP-dependent helicase HepA [Escherichia coli K12]361.2e-02

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mmob, Mycoplasma mobile; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

SNF2_N1SNF2 family N-terminal domain580-862273.84e-79

Helicase_C1Helicase conserved C-terminal domain906-98498.62.1e-26

ResIII1Type III restriction enzyme, res subu574-735-10.00.00037

SWIM1SWIM zinc finger54-9120.00.0028

DEAD1DEAD/DEAH box helicase578-741-37.90.022

SNF2_assoc1Bacterial SNF2 helicase associated190-570-163.10.033

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554357helicase with SNF2 domain [Mycoplasma penetrans HF-2] 46770.0e+00
gi|160935631hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613] 11904.9e-128
gi|167747531hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662] 11431.6e-122
gi|158320075Non-specific serine/threonine protein kinase [Alkaliphilus oremlandii OhILAs] 11279.3e-121
gi|139438973Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC 25986] 11126.2e-119
gi|160942559hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii M21/2] 10802.8e-115
gi|150388431Non-specific serine/threonine protein kinase [Alkaliphilus metalliredigens QYMF] 10509.6e-112
gi|154488684hypothetical protein BIFADO_01991 [Bifidobacterium adolescentis L2-32] 10401.3e-110
gi|119025981possible helicase [Bifidobacterium adolescentis ATCC 15703] 10355.3e-110
gi|194466323Non-specific serine/threonine protein kinase [Lactobacillus reuteri 100-23] 10265.0e-109


Maintained by Jun Ishikawa