General features

Gene IDMYPE9170
TypeCDS
From1232216
To1227840
Strand-
General namepolC
DefinitionDNA polymerase III subunit alpha
nt length4377
aa length1458
m.w.167741.33
COG[L] Replication, recombination and repair


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN034 polC DNA polymerase III polC-type 41131:368009982.3e-02
mgengi|12044881 DNA polymerase III, subunit alpha (polC-1) [Mycoplasma genitalium]10093.7e-05
mpulgi|15829146 DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma pulmonis]9203.0e-04
mmobgi|47458892 DNA polymerase III alpha subunit [Mycoplasma mobile 163K]9832.9e-05
mmycgi|42560899 DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC]10401.8e-07
mgalgi|31544298 PolC [Mycoplasma gallisepticum R]8772.3e-04
uuregi|13357937 DNA polymerase III alpha chain 1 [Ureaplasma urealyticum]10179.5e-06
phytgi|39938951 DNA polymerase III alpha subunit [Onion yellows phytoplasma]7421.1e-07
bsubgi|16078721 DNA polymerase III (alpha subunit) [Bacillus subtilis]10249.0e-03
cacegi|15896683 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum]8776.2e-06

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

DNA_pol3_alpha1Bacterial DNA polymerase III alpha su779-1261623.42.2e-184

Exonuc_X-T1Exonuclease421-580143.47e-40

PHP1PHP domain334-74355.91.5e-13

DNA_pol_B_exo1DNA polymerase family B, exonuclease282-592-92.10.041

3_5_exonuc13'-5' exonuclease397-588-42.20.13

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554369DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] 72000.0e+00
gi|196247598DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] 26790.0e+00
gi|138894778DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] 26730.0e+00
gi|56419793DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] 26510.0e+00
gi|110004377probable dna polymerase III alpha subunit protein [Spiroplasma citri] 26500.0e+00
gi|171324508DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] 26410.0e+00
gi|154686075PolC [Bacillus amyloliquefaciens FZB42] 26300.0e+00
gi|16078721DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] 26230.0e+00
gi|194015013DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 706... 26160.0e+00
gi|143342polymerase III 26150.0e+00


Maintained by Jun Ishikawa