General features

Gene IDMYPE9280
TypeCDS
From1245544
To1246242
Strand+
General nametruB
DefinitiontRNA pseudouridine 5S synthase
nt length699
aa length232
m.w.27029.93
COG[J] Translation, ribosomal structure and biogenesis


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpulgi|15829021 TRNA PSEUDOURIDINE SYNTHASE B (TRNA PSEUDOURIDINE 55 SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE) [Mycoplasma pulmonis]1301.9e-32
mmobgi|47459301 tRNA pseudouridine synthase B [Mycoplasma mobile 163K]1479.3e-38
mmycgi|42560883 tRNA pseudouridine synthase B [Mycoplasma mycoides subsp. mycoides SC]1601.8e-41
mgalgi|31544323 TruB [Mycoplasma gallisepticum R]1541.2e-39
uuregi|13357914 tRNA pseudouridine 55 synthase [Ureaplasma urealyticum]1724.5e-45
phytgi|39938723 pseudouridine synthase [Onion yellows phytoplasma]1392.1e-35
bsubgi|16078729 tRNA pseudouridine 55 synthase [Bacillus subtilis]1191.5e-28
cacegi|15895081 Pseudouridine synthase [Clostridium acetobutylicum]1191.1e-28
ecoligi|16131058 tRNA pseudouridine synthase B [Escherichia coli K12]1106.2e-26

*mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

TruB_N1TruB family pseudouridylate synthase38-188118.62e-32

PseudoU_synth_21RNA pseudouridylate synthase18-135-45.50.33

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554377tRNA pseudouridine 5S synthase [Mycoplasma penetrans HF-2] 10302.1e-110
gi|171920951tRNA pseudouridine synthase B [Ureaplasma urealyticum serovar 9 str. ATCC 33175] 3823.2e-35
gi|13357914tRNA pseudouridine synthase B [Ureaplasma parvum serovar 6 str. ATCC 27818] 3751.8e-34
gi|148377492tRNA pseudouridine synthase B [Mycoplasma agalactiae PG2] 3742.4e-34
gi|110004498putative trna pseudouridine synthase b protein [Spiroplasma citri] 3691.2e-33
gi|187478882tRNA pseudouridine synthase B [Bordetella avium 197N] 3501.5e-31
gi|94263053tRNA pseudouridine synthase B [delta proteobacterium MLMS-1] 3501.6e-31
gi|42560883tRNA pseudouridine synthase B [Mycoplasma mycoides subsp. mycoides SC str. PG1] 3492.1e-31
gi|188159605tRNA pseudouridine synthase B [Mycoplasma mycoides subsp. mycoides LC str. GM12] 3492.2e-31
gi|118594126tRNA pseudouridine synthase B [Methylophilales bacterium HTCC2181] 3492.3e-31


Maintained by Jun Ishikawa