General features

Gene IDMYPE9920
TypeCDS
From1316166
To1315171
Strand-
General namerpoA
DefinitionRNA polymerase subunit alpha
nt length996
aa length331
m.w.37330.71
COG[K] Transcription


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
mpneMPN191 rpoA DNA-directed RNA polymerase alpha chain 231448:2324313186.3e-89
mgengi|12045030 DNA-directed RNA polymerase, subunit alpha (rpoA) [Mycoplasma genitalium]3261.7e-91
mpulgi|15829032 DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN (TRANSCRIPTASE ALPHA CHAIN) (RNA POLYMERASE ALPHA SUBUNIT)rpo [Mycoplasma pulmonis]1794.3e-47
mmobgi|47459096 DNA-directed RNA polymerase alpha chain [Mycoplasma mobile 163K]2026.5e-54
mmycgi|42561246 DNA-directed RNA polymerase alpha chain [Mycoplasma mycoides subsp. mycoides SC]2334.6e-63
mgalgi|31544832 RpoA [Mycoplasma gallisepticum R]3172.3e-88
uuregi|13357817 DNA-directed RNA polymerase alpha chain [Ureaplasma urealyticum]3084.8e-86
phytgi|39938713 DNA-directed RNA polymerase alpha subunit [Onion yellows phytoplasma]1541.3e-39
bsubgi|16077211 RNA polymerase (alpha subunit) [Bacillus subtilis]2276.5e-61
cacegi|15896355 DNA-dependent RNA polymerase alpha subunit [Clostridium acetobutylicum]2382.6e-64
ecoligi|16131174 DNA-directed RNA polymerase alpha subunit [Escherichia coli K12]1553.5e-39

*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;

Pfam search result


ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_A_bac1RNA polymerase Rpb3/RpoA insert domain57-185157.73.5e-44

RNA_pol_A_CTD1Bacterial RNA polymerase, alpha chain C254-32191.72.6e-24

RNA_pol_L1RNA polymerase Rpb3/Rpb11 dimerisation18-24076.01.4e-19

BLAST search result (top 10 hits)

IDDescriptionScoreE-value
gi|26554440RNA polymerase subunit alpha [Mycoplasma penetrans HF-2] 15062.9e-165
gi|13507930RNA polymerase alpha core subunit [Mycoplasma pneumoniae M129] 7779.5e-81
gi|12045030DNA-directed RNA polymerase, alpha subunit [synthetic Mycoplasma genitalium JCVI... 7715.1e-80
gi|12230607DNA-directed RNA polymerase alpha chain [Mycoplasma gallisepticum] 7455.4e-77
gi|31544832RpoA [Mycoplasma gallisepticum R] 7438.3e-77
gi|13357817DNA-directed RNA polymerase, alpha subunit [Ureaplasma parvum serovar 6 str. ATC... 7275.5e-75
gi|171920602DNA-directed RNA polymerase, alpha subunit [Ureaplasma urealyticum serovar 9 str... 7251.0e-74
gi|160914535hypothetical protein EUBDOL_00541 [Eubacterium dolichum DSM 3991] 6211.1e-62
gi|69247195DNA-directed RNA polymerase [Enterococcus faecium DO] 5976.8e-60
gi|167755938hypothetical protein CLORAM_01458 [Clostridium ramosum DSM 1402] 5941.7e-59


Maintained by Jun Ishikawa